Protein Bagels With Whole Wheat Flour

Name: Protein Bagels With Whole Wheat Flour
Prep time: 20 min
Cook time: 25 min
Total time: 45 min
Yield: 8 bagels
Ingredients: 2 cups whole wheat flour; 1 cup Greek yogurt; 1 tablespoon baking powder; 1 teaspoon salt; 1 tablespoon honey or maple syrup; 1/4 cup sesame seeds (optional); 1 egg (for egg wash, optional); Water, as needed

Highlighted under: Lean & Nourishing

I love making these Protein Bagels with Whole Wheat Flour because they are deliciously chewy and packed with nutrients. The whole wheat adds a hearty flavor while providing extra fiber and protein, making them a perfect breakfast option. I enjoy customizing them with my favorite toppings, and they pair perfectly with cream cheese or avocado. Plus, they're surprisingly easy to make from scratch, and I appreciate knowing exactly what goes into my food. Trust me, once you try these, you'll be hooked!

Created by

Maribel Hayes

Last updated on 2026-02-01T22:17:35.911Z

When I first tried making bagels at home, I was amazed at how simple the process actually was. Using whole wheat flour not only boosts the nutritional content but also creates a wonderful texture that is both chewy and satisfying. I found that letting the dough rest for a bit makes a big difference in achieving that perfect bagel consistency.

After experimenting with various toppings, I've settled on using sesame seeds and everything bagel seasoning. They add a delightful crunch and flavor that complements the softness of the bagels beautifully. I highly recommend trying them warm out of the oven—they’re simply irresistible!

Why You Will Love These Bagels
Packed with protein for a satisfying breakfast
Hearty whole wheat flavor that feels wholesome
Easy to customize with your favorite toppings or spreads
Freshly baked aroma that fills your kitchen

Getting the Texture Just Right

The key to achieving perfectly chewy bagels is in the dough consistency. When mixing the whole wheat flour and Greek yogurt, aim for a texture that is slightly tacky but not overly sticky. If you find that the dough is too dry, add water gradually—around a tablespoon at a time—until it holds together well. On the other hand, if it’s too wet, don’t hesitate to sprinkle in a touch more flour during kneading. This balance is crucial for the final product’s texture.

Kneading the dough for about 5 minutes is essential for gluten development. The dough should become smooth and elastic, indicating that the gluten has been activated. You can test for readiness by pressing a finger into the dough; it should bounce back slightly. This step sets the foundation for that satisfying chewiness you expect from a bagel.

Boiling: The Secret to Bagel Brilliance

Boiling the bagels is a critical step that differentiates them from regular bread. It gelatinizes the outside of the bagel, giving it a shiny crust and helping it hold its shape during baking. Make sure the water is at a rolling boil before adding the bagels; this helps ensure they cook evenly. You should boil each bagel for about 1 minute on each side, watching for slight puffing, which indicates they’re ready to be removed.

If you're looking to experiment with flavors, consider adding a tablespoon of baking soda or malt syrup to the boiling water. This not only enhances the bagel’s crust but adds a subtle sweetness and depth to the flavor. Just remember to keep an eye on the bagels as they boil—too long can lead to a dense texture.

Ingredients

Protein Bagels Ingredients

2 cups whole wheat flour
1 cup Greek yogurt
1 tablespoon baking powder
1 teaspoon salt
1 tablespoon honey or maple syrup
1/4 cup sesame seeds (optional)
1 egg (for egg wash, optional)
Water, as needed

Additional Tips

Feel free to experiment with different toppings such as poppy seeds or garlic powder for extra flavor!

Instructions

Prepare the Dough

In a large bowl, mix together the whole wheat flour, baking powder, and salt. Add the Greek yogurt and honey, then combine until a dough forms. Knead the dough on a floured surface for about 5 minutes, adding water as needed to achieve a workable consistency.

Shape the Bagels

Divide the dough into 8 equal pieces. Roll each piece into a ball, then poke a hole in the center to form the bagel shape. Make sure the hole is large enough, as it will shrink during cooking.

Boil the Bagels

Bring a large pot of water to a boil. Gently lower the bagels into the boiling water, a few at a time, and boil for about 1 minute on each side. Remove and place them on a baking sheet lined with parchment paper.

Bake the Bagels

Preheat your oven to 375°F (190°C). If desired, brush the bagels with an egg wash and sprinkle sesame seeds on top. Bake for 25 minutes or until golden brown.

Cool and Enjoy

Let the bagels cool on a wire rack for a few minutes before serving. Enjoy them fresh with your favorite toppings!

Serving Suggestions

These bagels are fabulous with cream cheese, smoked salmon, or even avocado for a hearty breakfast!

Pro Tips

For a lighter bagel, you can substitute half of the whole wheat flour with all-purpose flour. Additionally, making a big batch and freezing them can save time on busy mornings!

Storing and Freezing Bagels

These protein bagels can be stored in an airtight container at room temperature for up to 3 days. If you want to keep them longer, I recommend freezing them. Just place the cooled bagels in a freezer-safe bag, separating them with parchment paper to prevent sticking. They can last up to 3 months in the freezer, making them a convenient make-ahead option for busy mornings.

To reheat the frozen bagels, you have a couple of options. If you prefer a fresh-out-of-the-oven taste, preheat your oven to 350°F (175°C) and bake them for about 10-15 minutes until warmed through. Alternatively, you can microwave them for about 30 seconds, but this may result in a softer crust.

Customizing Your Bagel Experience

Feel free to get creative with toppings to tailor your bagels to your taste! After brushing with egg wash, you might sprinkle everything bagel seasoning for a savory kick or use fresh herbs for a burst of flavor. For a spicier twist, consider adding crushed red pepper flakes or garlic powder into the dough before forming the bagels.

Additionally, these bagels are a great base for healthy spreads. Pair them with cream cheese, avocado, or nut butter for a delicious breakfast or snack. You can also slice them in half and transform them into mini breakfast sandwiches with eggs and veggies, making them a versatile option for any mealtime.

Questions About Recipes

→ Can I use all-purpose flour instead of whole wheat flour?

Yes, but keep in mind that the texture and flavor will differ. Whole wheat adds more nutrients and a heartier taste.

→ How do I store leftover bagels?

Store them in an airtight container at room temperature for 2-3 days, or freeze them for longer freshness.

→ Can I add ingredients like cheese or herbs to the dough?

Absolutely! Feel free to get creative and mix in your favorite ingredients for added flavor.

→ What is the best way to reheat bagels?

Toast them in a toaster or an oven until heated through for a crispy exterior and soft interior.